Network Information
Subnetworks of GOBP |
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5S class rRNA transcription from RNA polymerase III type 1 promoter
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DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
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DNA replication
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ER-associated ubiquitin-dependent protein catabolic process
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L-methionine biosynthetic process from methylthioadenosine
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PSII associated light-harvesting complex II catabolic process
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RNA metabolic process
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RNA methylation
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RNA polymerase II transcriptional preinitiation complex assembly
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RNA splicing
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RNA splicing, via endonucleolytic cleavage and ligation
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SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
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SRP-dependent cotranslational protein targeting to membrane
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SRP-dependent cotranslational protein targeting to membrane, translocation
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activation of cysteine-type endopeptidase activity involved in apoptotic process
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activation of signaling protein activity involved in unfolded protein response
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adenylate cyclase-modulating G-protein coupled receptor signaling pathway
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anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
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anthocyanin accumulation in tissues in response to UV light
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antigen processing and presentation of exogenous peptide antigen via MHC class I
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antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
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antigen processing and presentation of peptide antigen via MHC class I
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carbohydrate metabolic process
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cell proliferation
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cellular component disassembly involved in execution phase of apoptosis
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cellular protein metabolic process
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chlorophyll biosynthetic process
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cytoplasmic translation
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deadenylation-dependent decapping of nuclear-transcribed mRNA
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deadenylation-independent decapping of nuclear-transcribed mRNA
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defense response to bacterium, incompatible interaction
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dephosphorylation of RNA polymerase II C-terminal domain
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detection of temperature stimulus involved in sensory perception of pain
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dolichol-linked oligosaccharide biosynthetic process
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double-strand break repair via break-induced replication
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double-strand break repair via homologous recombination
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double-strand break repair via nonhomologous end joining
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double-strand break repair via synthesis-dependent strand annealing
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embryo development ending in seed dormancy
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endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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endosome to lysosome transport via multivesicular body sorting pathway
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endosome transport via multivesicular body sorting pathway
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exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
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exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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gene expression
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gluconeogenesis
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glycolytic process
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heterochromatin organization involved in chromatin silencing
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histone H3-K9 methylation
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interphase microtubule nucleation by interphase microtubule organizing center
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intrinsic apoptotic signaling pathway in response to DNA damage
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isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
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isopentenyl diphosphate biosynthetic process, mevalonate pathway
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mRNA 3'-end processing by stem-loop binding and cleavage
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mRNA metabolic process
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mRNA splicing, via spliceosome
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maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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metabolic process
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misfolded or incompletely synthesized protein catabolic process
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mitochondrial electron transport, NADH to ubiquinone
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mitochondrial electron transport, cytochrome c to oxygen
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mitochondrial electron transport, succinate to ubiquinone
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mitochondrial electron transport, ubiquinol to cytochrome c
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mitotic cell cycle
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mitotic spindle organization
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molybdenum incorporation into molybdenum-molybdopterin complex
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negative regulation of G1/S transition of mitotic cell cycle
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negative regulation of NF-kappaB transcription factor activity
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negative regulation of abscisic acid-activated signaling pathway
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negative regulation of cyclin-dependent protein serine/threonine kinase activity
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negative regulation of cyclin-dependent protein serine/threonine kinase by cyclin degradation
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negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
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negative regulation of epidermal growth factor receptor signaling pathway
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negative regulation of ethylene-activated signaling pathway
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negative regulation of insulin receptor signaling pathway
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negative regulation of proteasomal ubiquitin-dependent protein catabolic process
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negative regulation of synaptic growth at neuromuscular junction
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negative regulation of transcription from RNA polymerase II promoter
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negative regulation of transcription, DNA-templated
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negative regulation of transforming growth factor beta receptor signaling pathway
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negative regulation of translational initiation in response to stress
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negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
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neurogenesis
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nuclear polyadenylation-dependent mRNA catabolic process
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nuclear polyadenylation-dependent rRNA catabolic process
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nuclear polyadenylation-dependent tRNA catabolic process
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nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
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nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
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nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
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nucleobase-containing small molecule metabolic process
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nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
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nucleotide-binding oligomerization domain containing signaling pathway
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oligosaccharide-lipid intermediate biosynthetic process
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organ boundary specification between lateral organs and the meristem
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oxidation-reduction process
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pentose-phosphate shunt
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peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
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peptidyl-diphthamide biosynthetic process from peptidyl-histidine
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photosynthesis
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photosystem II assembly
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positive regulation of DNA-templated transcription, elongation
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positive regulation of G1/S transition of mitotic cell cycle
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positive regulation of G2/M transition of mitotic cell cycle
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positive regulation of Golgi to plasma membrane protein transport
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positive regulation of I-kappaB kinase/NF-kappaB signaling
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positive regulation of MyD88-dependent toll-like receptor signaling pathway
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positive regulation of NF-kappaB transcription factor activity
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positive regulation of NFAT protein import into nucleus
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positive regulation of RNA polymerase II transcriptional preinitiation complex assembly
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positive regulation of Ras protein signal transduction
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positive regulation of abscisic acid-activated signaling pathway
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positive regulation of cyclin-dependent protein serine/threonine kinase activity
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positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
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positive regulation of flavonoid biosynthetic process
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positive regulation of intrinsic apoptotic signaling pathway
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positive regulation of methylation-dependent chromatin silencing
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positive regulation of mitotic cell cycle spindle assembly checkpoint
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positive regulation of mitotic metaphase/anaphase transition
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positive regulation of multicellular organism growth
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positive regulation of nitric oxide biosynthetic process
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positive regulation of phosphorylation of RNA polymerase II C-terminal domain
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positive regulation of proteasomal ubiquitin-dependent protein catabolic process
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positive regulation of protein exit from endoplasmic reticulum
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positive regulation of protein serine/threonine kinase activity
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positive regulation of sequence-specific DNA binding transcription factor activity
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positive regulation of synaptic growth at neuromuscular junction
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positive regulation of transcription elongation from RNA polymerase II promoter
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positive regulation of transcription from RNA polymerase II promoter
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positive regulation of transcription initiation from RNA polymerase II promoter
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positive regulation of transcription of Notch receptor target
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positive regulation of transcription, DNA-templated
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positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
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posttranslational protein targeting to membrane, translocation
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pre-replicative complex assembly involved in nuclear cell cycle DNA replication
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production of miRNAs involved in gene silencing by miRNA
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production of ta-siRNAs involved in RNA interference
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proteasome-mediated ubiquitin-dependent protein catabolic process
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protein binding
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protein folding
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protein kinase C-activating G-protein coupled receptor signaling pathway
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protein phosphorylation
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protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
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protein ubiquitination involved in ubiquitin-dependent protein catabolic process
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proteolysis
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proteolysis involved in cellular protein catabolic process
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pseudocleavage involved in syncytial blastoderm formation
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purine ribonucleoside monophosphate biosynthetic process
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pyrimidine ribonucleotide biosynthetic process
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rRNA processing
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regulation of Golgi to plasma membrane protein transport
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regulation of acetyl-CoA biosynthetic process from pyruvate
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regulation of adult chitin-containing cuticle pigmentation
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regulation of alternative mRNA splicing, via spliceosome
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regulation of cyclin-dependent protein serine/threonine kinase activity
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regulation of double fertilization forming a zygote and endosperm
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regulation of double-strand break repair via homologous recombination
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regulation of flower development
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regulation of sequence-specific DNA binding transcription factor activity
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regulation of small GTPase mediated signal transduction
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regulation of synaptic growth at neuromuscular junction
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regulation of transcription from RNA polymerase II promoter
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regulation of transcription from RNA polymerase III promoter
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regulation of transcription involved in G1/S transition of mitotic cell cycle
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regulation of transcription, DNA-templated
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regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
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response to cadmium ion
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response to salt stress
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ribosome biogenesis
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small molecule metabolic process
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synaptic vesicle fusion to presynaptic active zone membrane
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systemic acquired resistance, salicylic acid mediated signaling pathway
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tRNA splicing, via endonucleolytic cleavage and ligation
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targeting of mRNA for destruction involved in RNA interference
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telomere maintenance via semi-conservative replication
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thylakoid membrane organization
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transcription elongation from RNA polymerase I promoter
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transcription elongation from RNA polymerase II promoter
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transcription elongation from RNA polymerase III promoter
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transcription initiation from RNA polymerase I promoter
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transcription initiation from RNA polymerase II promoter
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transcription, DNA-templated
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transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
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transcriptional open complex formation at RNA polymerase II promoter
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translation
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translational elongation
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translational initiation
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translational termination
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transmembrane receptor protein tyrosine kinase signaling pathway
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transmembrane transport
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ubiquitin-dependent protein catabolic process
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ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
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vegetative to reproductive phase transition of meristem
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viral life cycle
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viral process
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viral transcription
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Choice GO data
Subnetworks of KEGG pathway |
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Endocrine and other factor-regulated calcium reabsorption
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Epithelial cell signaling in Helicobacter pylori infection
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Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
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Glycosaminoglycan biosynthesis - heparan sulfate / heparin
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Glycosphingolipid biosynthesis - globo and isoglobo series
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Glycosphingolipid biosynthesis - lacto and neolacto series
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Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
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Signaling pathways regulating pluripotency of stem cells
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Tropane, piperidine and pyridine alkaloid biosynthesis
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Choice Kegg data
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Up-regulated genes in drought condition compared with watered condition by >2-fold in the crown root harvested at 6 days after sowing
Sebastian et al. Proc Natl Acad Sci U S A. 2016
Analyzer
Score Threshold:
User-input proteins
Rank | Protein name | Score (LLS) | GO biological process terms | KEGG pathway terms |
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Top 200 candidate proteins
Rank | Protein name | Score (LLS) | GO biological process terms | KEGG pathway terms |
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